It also offers to group sequences into different families/classes and export good quality images of MSAs. Genedoc is quite similar to Jalview and offers various features. But the only limitation is that it requires more space and therefore, sometimes, it troubles in getting started which can be managed by allocating more memory to it. The Linux package of Jalview can be easily used in a pipeline for sequence annotation and visualization and that’s why this is my favorite one. It can be easily accessed on Windows/Linux/Mac using the web installer. Creating sequence features is quite easy and these features can be exported for later use. Additionally, the associated protein structure can also be analyzed simultaneously and export the alignment in different formats including the images. Besides, all the sequences can be sorted according to the associated phylogenetic tree. You can easily import MSAs and group them using different colors and borders, name these groups. It offers a wide range of functions including analysis using phylogenetic trees, principal component analysis (PCA) plots, and molecular structure and annotation. Jalview is another program to edit, modify, and visualize MSAs. This article will mention a few important and useful alignment viewers with various functions to perform on the MSAs. For this purpose, we need sophisticated tools to analyze large MSAs. They provide insights to identify their structures and functions.
Multiple sequence alignments (MSAs) are quite valuable in terms of studying new enzymes or organisms.
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